{
  "_id": "6a156232acfb0bcc41d6114c",
  "Package": "rgph",
  "Type": "Package",
  "Title": "Pair Critical Points and Compute Persistent Homology of Reeb\nGraphs",
  "Version": "0.1.0",
  "Authors@R": "c(\nperson(\n\"Satyajit\", \"Mohanty\",\nemail = \"mohantysatyajit57@gmail.com\",\nrole = c(\"aut\")\n),\nperson(\n\"Shubham\", \"Singh\",\nemail = \"shubhamus16091998@example.com\",\nrole = c(\"aut\")\n),\nperson(\n\"Jason Cory\", \"Brunson\",\nemail = \"cornelioid@gmail.com\",\nrole = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0003-3126-9494\")\n),\nperson(\n\"Paul\", \"Rosen\",\nemail = \"paul.rosen@utah.edu\",\nrole = c(\"cph\", \"ctb\"),\ncomment = c(\"ReebGraphPairing; GPL-3 license\",\nORCID = \"0000-0002-0873-9518\")\n),\nperson(\n\"Junyi\", \"Tu\",\nemail = \"JXTU@salisbury.edu\",\nrole = c(\"cph\", \"ctb\"),\ncomment = c(\"ReebGraphPairing; GPL-3 license\",\nORCID = \"0000-0001-7026-7454\")\n)\n)",
  "Description": "Interface to the 'ReebGraphPairing' program to compute\ncritical points of Reeb graphs following Tu, Hajij, & Rosen\n(2019) <doi:10.1007/978-3-030-33720-9_8> via the 'rJava'\npackage. Also store Reeb graphs in a minimal S3 class, convert\nbetween other network data structures, and post-process pairing\ndata to obtain extended persistent homology following Carrière\n& Oudot (2018) <doi:10.1007/s10208-017-9370-z>.",
  "SystemRequirements": "Java (>= 5.0)",
  "License": "GPL-3",
  "Encoding": "UTF-8",
  "LazyData": "true",
  "RoxygenNote": "7.3.3",
  "VignetteBuilder": "knitr",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-26 09:01:22 UTC",
    "User": "root"
  },
  "Author": "Satyajit Mohanty [aut], Shubham Singh [aut], Jason Cory Brunson\n[aut, cre] (ORCID: <https://orcid.org/0000-0003-3126-9494>),\nPaul Rosen [cph, ctb] (ReebGraphPairing; GPL-3 license, ORCID:\n<https://orcid.org/0000-0002-0873-9518>), Junyi Tu [cph, ctb]\n(ReebGraphPairing; GPL-3 license, ORCID:\n<https://orcid.org/0000-0001-7026-7454>)",
  "Maintainer": "Jason Cory Brunson <cornelioid@gmail.com>",
  "Config/pak/sysreqs": "make default-jdk",
  "Repository": "https://corybrunson.r-universe.dev",
  "Date/Publication": "2026-02-24 19:30:02 UTC",
  "RemoteUrl": "https://github.com/cran/rgph",
  "RemoteRef": "HEAD",
  "RemoteSha": "209a864645bfe3675327f6b30e4e75cdfdeafe7a",
  "MD5sum": "ae453f0d5f2982d93693d785895bb9da",
  "_user": "corybrunson",
  "_type": "src",
  "_file": "rgph_0.1.0.tar.gz",
  "_fileid": "1d42aa2aa10416b80844f1dae69cd8e72a80dae847c0b2c0221a70fe9c471465",
  "_filesize": 1254710,
  "_sha256": "1d42aa2aa10416b80844f1dae69cd8e72a80dae847c0b2c0221a70fe9c471465",
  "_created": "2026-05-26T09:01:22.000Z",
  "_published": "2026-05-26T09:04:50.280Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 77841356450,
      "time": 168,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7213006686"
    },
    {
      "job": 77841356426,
      "time": 173,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7213008787"
    },
    {
      "job": 77841356433,
      "time": 126,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7212991898"
    },
    {
      "job": 77841356786,
      "time": 90,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7212980581"
    },
    {
      "job": 77840744984,
      "time": 216,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7212950708"
    },
    {
      "job": 77841356508,
      "time": 134,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7212995325"
    },
    {
      "job": 77841356454,
      "time": 108,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7212986157"
    },
    {
      "job": 77841356632,
      "time": 148,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7212999775"
    },
    {
      "job": 77841356531,
      "time": 110,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7212987051"
    }
  ],
  "_buildurl": "https://github.com/r-universe/corybrunson/actions/runs/26442627586",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/cran/rgph",
  "_commit": {
    "id": "209a864645bfe3675327f6b30e4e75cdfdeafe7a",
    "author": "Jason Cory Brunson <cornelioid@gmail.com>",
    "committer": "cran-robot <csardi.gabor+cran@gmail.com>",
    "message": "version 0.1.0\n",
    "time": 1771961402
  },
  "_maintainer": {
    "name": "Jason Cory Brunson",
    "email": "cornelioid@gmail.com",
    "login": "corybrunson",
    "mastodon": "@cornelioid@mastodon.social",
    "description": "Mathematician by training, data scientist by testing. Relatively new to pretty much everything.\n🇵🇸",
    "uuid": 7768027,
    "orcid": "0000-0003-3126-9494"
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 2.7.0",
      "role": "Depends"
    },
    {
      "package": "rJava",
      "version": ">= 0.5-0",
      "role": "Depends"
    },
    {
      "package": "phutil",
      "role": "Depends"
    },
    {
      "package": "rlang",
      "role": "Suggests"
    },
    {
      "package": "tinytest",
      "role": "Suggests"
    },
    {
      "package": "igraph",
      "version": ">= 0.6-0",
      "role": "Suggests"
    },
    {
      "package": "network",
      "version": ">= 1.19.0",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "dplyr",
      "role": "Suggests"
    },
    {
      "package": "tidyr",
      "role": "Suggests"
    },
    {
      "package": "scales",
      "role": "Suggests"
    },
    {
      "package": "ggplot2",
      "role": "Suggests"
    },
    {
      "package": "bench",
      "role": "Suggests"
    }
  ],
  "_owner": "cran",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2026-09",
      "n": 1
    }
  ],
  "_tags": [
    {
      "name": "0.1.0",
      "date": "2026-02-24"
    }
  ],
  "_stars": 0,
  "_contributors": [
    {
      "user": "corybrunson",
      "count": 1,
      "uuid": 7768027
    }
  ],
  "_userbio": {
    "uuid": 7768027,
    "type": "user",
    "name": "Cory Brunson",
    "description": "Mathematician by training, data scientist by testing. Relatively new to pretty much everything.\r\n🇵🇸"
  },
  "_downloads": {
    "count": 225,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/rgph"
  },
  "_searchresults": 6,
  "_topics": [
    "openjdk"
  ],
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "extra/rgph.html",
    "manual.pdf"
  ],
  "_realowner": "corybrunson",
  "_cranurl": false,
  "_releases": [
    {
      "version": "0.1.0",
      "date": "2026-02-24"
    }
  ],
  "_exports": [
    "as_igraph",
    "as_network",
    "as_reeb_graph",
    "read_reeb_graph",
    "reeb_graph",
    "reeb_graph_pairs",
    "reeb_graph_persistence"
  ],
  "_datasets": [
    {
      "name": "buddha",
      "title": "Mesh-Derived Reeb Graphs",
      "object": "buddha",
      "class": [
        "reeb_graph",
        "list"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    },
    {
      "name": "david",
      "title": "Mesh-Derived Reeb Graphs",
      "object": "david",
      "class": [
        "reeb_graph",
        "list"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    },
    {
      "name": "flower",
      "title": "Mesh-Derived Reeb Graphs",
      "object": "flower",
      "class": [
        "reeb_graph",
        "list"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    },
    {
      "name": "topology",
      "title": "Mesh-Derived Reeb Graphs",
      "object": "topology",
      "class": [
        "reeb_graph",
        "list"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "as_reeb_graph",
      "title": "Coerce objects to class 'reeb_graph'",
      "topics": [
        "as_igraph",
        "as_igraph.reeb_graph",
        "as_network",
        "as_network.reeb_graph",
        "as_reeb_graph",
        "as_reeb_graph.igraph",
        "as_reeb_graph.network"
      ]
    },
    {
      "page": "reeb_graph",
      "title": "An S3 class and constructors for Reeb graphs",
      "topics": [
        "format.reeb_graph",
        "print.reeb_graph",
        "read_reeb_graph",
        "reeb_graph"
      ]
    },
    {
      "page": "reeb_graph_examples",
      "title": "Mesh-Derived Reeb Graphs",
      "topics": [
        "buddha",
        "david",
        "flower",
        "reeb_graph_examples",
        "topology"
      ]
    },
    {
      "page": "reeb_graph_pairs",
      "title": "Pair Reeb Graph Critical Points via Java",
      "topics": [
        "as.data.frame.reeb_graph_pairs",
        "format.reeb_graph_pairs",
        "print.reeb_graph_pairs",
        "reeb_graph_pairs",
        "reeb_graph_pairs.default",
        "reeb_graph_pairs.igraph",
        "reeb_graph_pairs.network",
        "reeb_graph_pairs.reeb_graph"
      ]
    },
    {
      "page": "reeb_graph_persistence",
      "title": "Compute Extended Persistent Homology of a Reeb Graph",
      "topics": [
        "reeb_graph_persistence",
        "reeb_graph_persistence.default",
        "reeb_graph_persistence.igraph",
        "reeb_graph_persistence.network",
        "reeb_graph_persistence.reeb_graph",
        "reeb_graph_persistence.reeb_graph_pairs"
      ]
    }
  ],
  "_readme": "https://github.com/cran/rgph/raw/HEAD/README.md",
  "_rundeps": [
    "BH",
    "cli",
    "cpp11",
    "phutil",
    "rJava",
    "rlang"
  ],
  "_sysdeps": [
    {
      "shlib": "libjvm",
      "package": "openjdk-21-jre-headless",
      "headers": "openjdk-21-jre-headless",
      "source": "openjdk",
      "version": "21.0.10+7-1~24.04",
      "name": "openjdk",
      "homepage": "https://openjdk.java.net/",
      "description": "OpenJDK Java runtime, using Hotspot JIT (headless)"
    }
  ],
  "_vignettes": [
    {
      "source": "benchmark.Rmd",
      "filename": "benchmark.html",
      "title": "Runtime Comparison of Critical Point Pairing Algorithms",
      "engine": "knitr::rmarkdown",
      "headings": [
        "The running example",
        "A more complex case",
        "How performance and improvement scale"
      ],
      "created": "2026-02-24 19:30:02",
      "modified": "2026-02-24 19:30:02",
      "commits": 1
    }
  ],
  "_score": 2.6989700043360187,
  "_indexed": true,
  "_nocasepkg": "rgph",
  "_universes": [
    "corybrunson"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.1.0",
      "date": "2026-05-26T09:04:07.000Z",
      "distro": "noble",
      "commit": "209a864645bfe3675327f6b30e4e75cdfdeafe7a",
      "fileid": "39df0a64c12ec23659c18a8eb4cdde442d81c6c6a84f2de859882b5548639506",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/corybrunson/actions/runs/26442627586"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "0.1.0",
      "date": "2026-05-26T09:04:11.000Z",
      "distro": "noble",
      "commit": "209a864645bfe3675327f6b30e4e75cdfdeafe7a",
      "fileid": "eb5e8c92caff93b4e4b0990c11cdcca222cd08f82bb8929751ebe7afc5aab95c",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/corybrunson/actions/runs/26442627586"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.1.0",
      "date": "2026-05-26T09:03:30.000Z",
      "commit": "209a864645bfe3675327f6b30e4e75cdfdeafe7a",
      "fileid": "5cd8e021337107b612a43bba4f117b96f3ff474e82ea3a36c299c7afbd6bcfb6",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/corybrunson/actions/runs/26442627586"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "0.1.0",
      "date": "2026-05-26T09:02:55.000Z",
      "commit": "209a864645bfe3675327f6b30e4e75cdfdeafe7a",
      "fileid": "9965cba75faac3f01f7409a41eaa86ccf9e76f31cc5d3cb966ba1ce6bdd57ee8",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/corybrunson/actions/runs/26442627586"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.1.0",
      "date": "2026-05-26T09:03:55.000Z",
      "commit": "209a864645bfe3675327f6b30e4e75cdfdeafe7a",
      "fileid": "db4f382498c19eea53913ace032cf0a16e7c9e85a64548070bc36939f1cccb93",
      "status": "success",
      "buildurl": "https://github.com/r-universe/corybrunson/actions/runs/26442627586"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.1.0",
      "date": "2026-05-26T09:03:02.000Z",
      "commit": "209a864645bfe3675327f6b30e4e75cdfdeafe7a",
      "fileid": "f3f9c103b9c88aa4bed5aaa85e6e3d111ae5292517383e5e572c7e9e9f42e23d",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/corybrunson/actions/runs/26442627586"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.1.0",
      "date": "2026-05-26T09:03:43.000Z",
      "commit": "209a864645bfe3675327f6b30e4e75cdfdeafe7a",
      "fileid": "6b7a92f2a3b06ef1b473c4988d18ccbfb2d4742ff21f75148f0a1101fb76a221",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/corybrunson/actions/runs/26442627586"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "0.1.0",
      "date": "2026-05-26T09:02:59.000Z",
      "commit": "209a864645bfe3675327f6b30e4e75cdfdeafe7a",
      "fileid": "a3fd87063d0fe04c731b533f334ff4bb699e5e4b46075f6972fc1147f3fba901",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/corybrunson/actions/runs/26442627586"
    }
  ]
}